PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00149.55
Common NameAMTR_s00149p00075900, LOC18437439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family LSD
Protein Properties Length: 144aa    MW: 14916.4 Da    PI: 7.7285
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00149.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132751125
                                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                             C+gCr+lL YP GA+sV+Ca+C++V
  evm_27.model.AmTr_v1.0_scaffold00149.55 27 CSGCRNLLLYPVGATSVCCAVCNAV 51
                                             ************************9 PP

2zf-LSD146.55.8e-156690125
                                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                             CggC+tlL+Y rGA+sV+C++C+t+
  evm_27.model.AmTr_v1.0_scaffold00149.55 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                                             ***********************97 PP

3zf-LSD140.93.4e-13104128125
                                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                              Cg+C+ lL+Y +GA+sV+Ca+C++V
  evm_27.model.AmTr_v1.0_scaffold00149.55 104 CGNCQMLLMYQYGARSVKCAVCNFV 128
                                              ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.6E-132454IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.37E-527125IPR011031Multihaem cytochrome
PfamPF069431.4E-102751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.4E-146392IPR005735Zinc finger, LSD1-type
PfamPF069439.5E-136690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-10101131IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTAPNG TQGQLVCSGC RNLLLYPVGA TSVCCAVCNA VTAVPPPGTE  60
MAQLICGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGARSV  120
KCAVCNFVTS VGASPSSEQK FTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847710.12e-99PREDICTED: protein LSD1
RefseqXP_011624573.12e-99PREDICTED: protein LSD1
SwissprotQ0J7V91e-80LSD1_ORYSJ; Protein LSD1
TrEMBLW1PNK22e-99W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-64lsd one like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]